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Dunalska JA, Gómiak D, Jaworska B, Gaiser E.  2012.  Effect of temperature on organic matter transformation in a different ambient nutrient availability. Ecological Engineering. 49:27-34.
Dunalska J, Wiśniewski G.  2016.  Can we stop the degradation of lakes? Innovative approaches in lake restoration. Ecological Engineering. 95:714-722.
Dunalska JA, Staehr PA, Jaworska B, Gómiak D, Gomułka P.  2014.  Ecosystem metabolism in a lake restored by hypolimnetic withdrawal. Ecological Engineering. 73:616-623.
Dunalska JA.  2011.  Impact of morphometric and catchment variables on summer organic carbon richness in deep temperate lakes. Knowledge and Management of Aquatic Ecosystems. (403):3-13.
Dunalska JA.  2011.  Total organic carbon as a new index for monitoring trophic states in lakes. Oceanological and Hydrobiological Studies. 40:112-115.
Dunalska JA, Grochowska J, Sniewski G, Orkowska-Krzebietke A.  2015.  Can we restore badly degraded urban lakes? Ecological Engineering. 82:432-441.
Dugan HA, Woolway RI, Santoso AB, Corman JR, Jaimes A, Nodine ER, Patil VP, Zwart JA, Brentrup J.A., Hetherington AL et al..  2016.  Consequences of gas flux model choice on the interpretation of metabolic balance across 15 lakes. Inland Waters.
Dugan H., Hanson P.C., Weathers K.C..  2016.  Outcomes from the GLEON fellowship program. Training graduate students in data driven network science. AGU Fall Meeting Abstracts.
Doyle B., de Eyto E., Dillane M., Poole R., McCarthy V., Ryder E., Jennings E.  2019.  Synchrony in catchment stream colour levels is driven by both local and regional climate. Biogeosciences. 16:1053–1071.
Doubek J.P., Campbell K.L., Doubek K., Hamre K.D., Lofton M.E., McClure R.P., Ward N.K., Carey C.C..  2018.  Oxygen-induced trade-offs on freshwater zooplankton diel vertical migration. Ecosphere. 9(7)
Doubek J.P., Carey C.C., Lavender M., Winegardner A.K., Beaulieu M., Kelly P.T., Pollard A.I., Straile D., Stockwell J.D..  2019.  Calanoid copepod zooplankton density is positively associated with water residence time across the continental United States. PLoS ONE.
Doan A, Niu F, Ré C, Shavlik JW.  2011.  Tuffy : Scaling up Statistical Inference in Markov Logic Networks using an RDBMS. PVLDB. 4:373-384.
Denfeld BA, Kortelainen P, Rantakari M, Sobek S, Weyhenmeyer GA.  2016.  Regional Variability and Drivers of Below Ice CO2 in Boreal and Subarctic Lakes. Ecosystems. 19(3)
Denfeld B.A, Wallin MB, Sahlée E, Sobek S, Kokic J, Chmiel HE, Weyhenmeyer GA.  2015.  Temporal and spatial carbon dioxide concentration patterns in a small boreal lake in relation to ice-cover dynamics. Boreal Environment Research. 20
de Eyto E, Kelly S., Ryder E., Dillane M, Archer L., O'Cathain D., Daly S., Lyons K., Obrador B, Brentrup J. et al..  2019.  High frequency monitoring reveals fine scale spatial and temporal dynamics of the deep chlorophyll maximum of a stratified coastal lagoon. Estuarine, Coastal and Shelf Science . 218:278-291.
de Eyto E, Jennings E., Ryder E., Sparber K., Dillane M., Dalton C., Poole R..  2016.  Response of a humic lake ecosystem to an extreme precipitation event: physical, chemical, and biological implications. Inland waters. 6(4):483-498.
D. BB, Denfeld B.A, Stockwell J.D, Flaim G., Grossart H.PF, Knoll L.B, Maier D.B, North R.L, Rautio M., Rusak J.A et al..  2018.  The unique methodological challenges of winter limnology. Limnology and Oceanography Methods. 17

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