Presentations

• Intro the CUAHSI information system, Jon Pollak and Rick Hooper
• Introduction to DataONE, Dave Vieglais
• DataONE data management for synthesis, Ben Leinfelder

Example R scripts

• Accessing data in the GLEON DataONE data product repository and formatting them for use in rLakeAnalyzer
• Accessing data in the GLEON CUAHSI sensor data repository and formatting them for use in rLakeAnalyzer
• Water temperature data in rLakeAnalyzer

Important URLs

The two new GLEON repositories:

• GLEON DataONE Member node interface: https://poseidon.limnology.wisc.edu/metacatui/ (We encourage you to register an account here before the meeting if you intend to bring data)
  
  • Use "KNB/AOOS" as the organization when registering a new account
  • Respond to the verification email that is sent.
  • When signing in to this new account, use "unaffiliated" as the organization.
• Centralized DataONE search interface: https://cn-stage.test.dataone.org/onemercury/
• CUAHSI HydroServer: http://hydroserver.cuahsi.org (We encourage you to register an account here before the meeting if you intend to bring data)
  • HydroServer User Guide

Given the possible internet bottleneck you may want to download some of the following:

DataONE Metadata editor ‘Morpho’:

• Morpho portal: https://knb.ecoinformatics.org/#tools/morpho (download the appropriate version for you operating system here, also download the user guide)

CUAHSI HydroDesktop:

• HydroDesktop portal: http://his.cuahsi.org/hydrodesktop.html  (windows only version can be downloaded here, plus user guide and quickstart guide)
• Once registered with the CUAHSI HydroServer important documentation and templates for data upload are here:  http://hydroserver.cuahsi.org/Home/Templates

The R statistical environment:

• Main R downloads: http://www.r-project.org/
• RStudio: http://www.rstudio.com/
• DataONE R package: https://github.com/DataONEorg/rdataone
• rLakeAnalyzer R package: http://cran.r-project.org/web/packages/rLakeAnalyzer/index.html

And some information you may want to peruse while waiting in the airport:

• DataONE: https://www.dataone.org/
• CUAHSI Water Data Center: https://www.cuahsi.org/  http://cuahsihis.blogspot.com/

URL important during the workshop

To access our server from Morpho it needs to point to (to be changed in the settings): https://poseidon.limnology.wisc.edu/metacat/metacat