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Journal Article
Shade A, Carey CC, Kara EL, Bertilsson S, McMahon KD, Smith MC.  2009.  Can the black box be cracked? The augmentation of microbial ecology by high-resolution, automated sensing technologies. The ISME Journal. 3:881-888.
Kara EL, Hanson PC, Hu Y-H, Winslow LA, McMahon KD.  2013.  A decade of seasonal dynamics and co-occurences within freshwater bacterioplankton communities from eutrophic Lake Mendota, Wisconsin, USA. The ISME Journal: Multidisciplinary Journal of Microbial Ecology. 7(3)
Shade A, Chiu CY, McMahon KD.  2010.  Differential bacterial dynamics promote emergent community robustness to lake mixing: an epilimnion to hypolimnion transplant experiment. Environmental Microbiology. 12:455-66.
Read JS, Shade A, Wu CH, Gorzalski A, McMahon KD.  2011.  Gradual Entrainment Lake Inverter (GELI): A novel device for experimental lake mixing. Limnology and Oceanography: Methods. :14-28.
Jones SE, Kratz TK, Chiu CY, McMahon KD.  2009.  The influence of typhoons on annual CO2 flux from a sub-tropical, humic lake. Global Change Biology. 15:243-254.
Shade A, Read JS, Youngblut ND, Fierer N, Knight R, Kratz TK, Lottig NR, Roden EE, Stanley EH, Stombaugh J et al..  2012.  Lake microbial communities are resilient after a whole-ecosystem disturbance. The ISME Journal. :2153-2167.
Beversdorf L, Miller T, McMahon KD.  2013.  The role of nitrogen fixation in cynobacterial bloom toxicity in a temperate, eutrophic lake. PLoS One. 8(2)
Shade A, Chiu CY, McMahon KD.  2010.  Seasonal and episodic lake mixing stimulate differential planktonic bacterial dynamics. Microbial Ecology. 59:546-554.
Kara EL, Hanson PC, Hamilton DP, Hipsey MR, McMahon KD, Read JS, Winslow LA, Dedrick J, Rose KC, Carey CC et al..  2012.  Time-scale dependence in numerical simulations: Assessment of physical, chemical, and biological predictions in a stratified lake at temporal scales of hours to months. Environmental Modelling & Software. 35
Jones SE, Chiu CY, Kratz TK, Wu JT, Shade A, McMahon KD.  2008.  Typhoons initiate predictable change in aquatic bacterial communities. Limnology and Oceanography. 53:1319-1326.

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