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Journal Article
Jones SE, Chiu CY, Kratz TK, Wu JT, Shade A, McMahon KD.  2008.  Typhoons initiate predictable change in aquatic bacterial communities. Limnology and Oceanography. 53:1319-1326.
Kara EL, Hanson PC, Hamilton DP, Hipsey MR, McMahon KD, Read JS, Winslow LA, Dedrick J, Rose KC, Carey CC et al..  2012.  Time-scale dependence in numerical simulations: Assessment of physical, chemical, and biological predictions in a stratified lake at temporal scales of hours to months. Environmental Modelling & Software. 35
Shade A, Chiu CY, McMahon KD.  2010.  Seasonal and episodic lake mixing stimulate differential planktonic bacterial dynamics. Microbial Ecology. 59:546-554.
Beversdorf L, Miller T, McMahon KD.  2013.  The role of nitrogen fixation in cynobacterial bloom toxicity in a temperate, eutrophic lake. PLoS One. 8(2)
Shade A, Read JS, Youngblut ND, Fierer N, Knight R, Kratz TK, Lottig NR, Roden EE, Stanley EH, Stombaugh J et al..  2012.  Lake microbial communities are resilient after a whole-ecosystem disturbance. The ISME Journal. :2153-2167.
Jones SE, Kratz TK, Chiu CY, McMahon KD.  2009.  The influence of typhoons on annual CO2 flux from a sub-tropical, humic lake. Global Change Biology. 15:243-254.
Read JS, Shade A, Wu CH, Gorzalski A, McMahon KD.  2011.  Gradual Entrainment Lake Inverter (GELI): A novel device for experimental lake mixing. Limnology and Oceanography: Methods. :14-28.
Shade A, Chiu CY, McMahon KD.  2010.  Differential bacterial dynamics promote emergent community robustness to lake mixing: an epilimnion to hypolimnion transplant experiment. Environmental Microbiology. 12:455-66.
Kara EL, Hanson PC, Hu Y-H, Winslow LA, McMahon KD.  2013.  A decade of seasonal dynamics and co-occurences within freshwater bacterioplankton communities from eutrophic Lake Mendota, Wisconsin, USA. The ISME Journal: Multidisciplinary Journal of Microbial Ecology. 7(3)
Shade A, Carey CC, Kara EL, Bertilsson S, McMahon KD, Smith MC.  2009.  Can the black box be cracked? The augmentation of microbial ecology by high-resolution, automated sensing technologies. The ISME Journal. 3:881-888.

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